Showing : rlog transformation • reset
6
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4
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3.7k
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regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog transformation vst variancestabilizingtransformation rlog
updated 7.8 years ago by 42k • written 7.8 years ago by • 0
6
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6
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7.8k
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DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
deseq2 vst rlog transformation
updated 5.4 years ago by ★ 13k • written 5.4 years ago by ▴ 20
4
votes
7
replies
4.1k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
6.5 years ago array chip ▴ 420
2
votes
3
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1.3k
views
Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
DESeq2 quality assesment vst rlog transformation
updated 5.9 years ago by 42k • written 5.9 years ago by ▴ 10
2
votes
2
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4.2k
views
choosing the normalization method (rlog, variance stabilizing transformation)
variancestabilizingtransformation rlog transformation deseq2
updated 6 months ago by • 0 • written 6.4 years ago by ▴ 80
2
votes
2
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1.2k
views
rlog transformation for Time-course data
deseq2 rlog transformation timecourse rnaseq
updated 7.6 years ago by 42k • written 7.6 years ago by • 0
2
votes
4
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3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
6.8 years ago Jane Merlevede ▴ 90
2
votes
2
replies
3.1k
views
DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
8.0 years ago Shobana Sekar ▴ 20
1
vote
1
reply
712
views
deseq2: use blind=T or blind=F when find gene groups?
rlog transformation deseq2
updated 5.4 years ago by 42k • written 5.4 years ago by ▴ 20
1
vote
1
reply
696
views
deseq2 rlog trasformation
deseq2 rlog transformation
updated 7.5 years ago by 42k • written 7.5 years ago by ▴ 40
1
vote
1
reply
1.5k
views
sample removal after clustering
deseq2 rlog transformation
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
1
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2
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1.8k
views
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2 PCA rlog transformation biotype
6.1 years ago JoannaF ▴ 10
0
votes
3
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1.3k
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Variance estimation with DESeq2 and rLog transformation.
deseq2 rlog transformation
updated 7.8 years ago by ★ 13k • written 7.8 years ago by • 0
0
votes
3
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7.3k
views
What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation
8.2 years ago lanhuong ▴ 20
0
votes
12
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11k
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
8.6 years ago sunil.mangalam • 0
0
votes
15
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2.7k
views
rlog not found
rlog rlog transformation
6.0 years ago crowsreign42 • 0
0
votes
4
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1.3k
views
rlog fast=TRUE not correct?
deseq2 rlog transformation vst
7.9 years ago ldetorrente ▴ 10
0
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3
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2.9k
views
Data normalization and transformation using DESeq2
deseq2 normalization rnaseq rlog transformation variancestabilizingtransformation
5.4 years ago chiara.facciotto • 0
0
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2
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4.9k
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DESeq2: how to interpret the heatmap clustering samples
deseq2 rlog transformation heatmap scale
7.1 years ago lina.faller ▴ 10
0
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3
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1.6k
views
rlog transformation using DESeq2
rlog transformation deseq2
updated 7.6 years ago by 42k • written 7.6 years ago by ▴ 60
20 results • Page 1 of 1
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Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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